Variant report

Variant	rs11206671
Chromosome Location	chr1:56322321-56322322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10158230	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206668	0.85[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs11206669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206670	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12024629	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12058859	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12132347	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12411257	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12727910	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12728204	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3924189	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3934487	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3935996	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4129669	0.81[EUR][1000 genomes]
rs4309021	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4412634	1.00[CHB][hapmap]
rs4540693	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4589149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926698	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6663328	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7539074	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7546553	0.89[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7549389	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9633424	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56315000-56323200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:56320000-56323200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:56320600-56323200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:56320800-56325600	Weak transcription	NHDF-Ad	bronchial
5	chr1:56321000-56325600	Weak transcription	Fetal Lung	lung
6	chr1:56321200-56322400	Enhancers	Psoas Muscle	Psoas
7	chr1:56321200-56323000	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr1:56321200-56325400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:56321400-56325400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:56321400-56325400	Weak transcription	Fetal Muscle Leg	muscle
11	chr1:56321600-56322400	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr1:56321600-56325800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:56322000-56322600	Enhancers	Fetal Stomach	stomach
14	chr1:56322200-56322400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr1:56322200-56322400	Enhancers	Left Ventricle	heart
16	chr1:56322200-56322400	Enhancers	Ovary	ovary
17	chr1:56322200-56322800	Enhancers	Rectal Smooth Muscle	rectum

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