Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10158230	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11206668	0.81[EUR][1000 genomes]
rs11206669	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11206670	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11206671	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12132347	0.83[AMR][1000 genomes]
rs12411257	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12727910	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12728204	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3924189	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3934487	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3935996	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4309021	0.81[EUR][1000 genomes]
rs4540693	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4589149	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4926698	0.81[EUR][1000 genomes]
rs6663328	0.81[EUR][1000 genomes]
rs7531257	0.92[EUR][1000 genomes]
rs7539074	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7546553	0.81[EUR][1000 genomes]
rs7549389	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9633424	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56295200-56320400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:56300400-56305400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:56300800-56310800	Weak transcription	Fetal Lung	lung
4	chr1:56301400-56302200	Enhancers	Placenta Amnion	Placenta Amnion
5	chr1:56301600-56302400	Enhancers	HepG2	liver
6	chr1:56301800-56306000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:56302000-56302200	Enhancers	Liver	Liver
8	chr1:56302000-56305600	Weak transcription	Fetal Stomach	stomach

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