Variant report

Variant	rs12027901
Chromosome Location	chr1:216841784-216841785
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11117642	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11117643	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11117656	0.86[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12028510	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12754372	0.89[GIH][hapmap];0.83[MEX][hapmap]
rs1498278	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17043350	0.81[CHB][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap]
rs4846616	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4846617	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4846644	0.81[CHB][hapmap]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216787400-216853800	Weak transcription	Pancreas	Pancrea
2	chr1:216814000-216856200	Weak transcription	Psoas Muscle	Psoas
3	chr1:216820400-216855400	Weak transcription	Fetal Heart	heart
4	chr1:216826000-216856200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:216834200-216844000	Weak transcription	Left Ventricle	heart
6	chr1:216834400-216860400	Weak transcription	Right Ventricle	heart
7	chr1:216838400-216843800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr1:216838400-216850000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr1:216840000-216850600	Weak transcription	Gastric	stomach
10	chr1:216840200-216863600	Weak transcription	Fetal Intestine Small	intestine
11	chr1:216840400-216853600	Weak transcription	Fetal Intestine Large	intestine
12	chr1:216840600-216843800	Weak transcription	Hela-S3	cervix
13	chr1:216841400-216842800	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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