Variant report

Variant	rs11117656
Chromosome Location	chr1:216849592-216849593
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11117642	0.86[CEU][hapmap];0.90[CHB][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11117643	0.86[CEU][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12027901	0.86[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12028510	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12754372	0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1498278	0.86[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17043350	0.89[YRI][hapmap];0.87[AMR][1000 genomes]
rs2789718	0.85[CHB][hapmap]
rs2820879	0.85[CHB][hapmap]
rs4846616	0.86[CEU][hapmap];0.90[CHB][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4846617	0.87[CEU][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4846644	0.90[YRI][hapmap];0.87[AMR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216787400-216853800	Weak transcription	Pancreas	Pancrea
2	chr1:216814000-216856200	Weak transcription	Psoas Muscle	Psoas
3	chr1:216820400-216855400	Weak transcription	Fetal Heart	heart
4	chr1:216826000-216856200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:216834400-216860400	Weak transcription	Right Ventricle	heart
6	chr1:216838400-216850000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr1:216840000-216850600	Weak transcription	Gastric	stomach
8	chr1:216840200-216863600	Weak transcription	Fetal Intestine Small	intestine
9	chr1:216840400-216853600	Weak transcription	Fetal Intestine Large	intestine
10	chr1:216842200-216855400	Weak transcription	Fetal Stomach	stomach
11	chr1:216844000-216860000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:216844200-216861000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr1:216844800-216852400	Weak transcription	Fetal Muscle Leg	muscle
14	chr1:216846000-216850000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:216848200-216852000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr1:216849400-216850400	Weak transcription	Left Ventricle	heart
17	chr1:216849400-216851000	Strong transcription	Placenta	Placenta
18	chr1:216849400-216851800	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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