Variant report

Variant	rs2820879
Chromosome Location	chr1:216883643-216883644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11117656	0.85[CHB][hapmap]
rs12028510	0.83[GIH][hapmap]
rs12754372	0.90[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.81[JPT][hapmap]
rs17043350	0.81[CHB][hapmap];0.89[GIH][hapmap]
rs2789718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4846644	0.81[CHB][hapmap]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216868200-216894000	Weak transcription	Placenta	Placenta
2	chr1:216879400-216888400	Weak transcription	Gastric	stomach
3	chr1:216883200-216883800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr1:216883200-216884000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:216883200-216884400	Flanking Active TSS	Fetal Heart	heart
6	chr1:216883400-216883800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:216883400-216883800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr1:216883400-216883800	Enhancers	Fetal Muscle Leg	muscle
9	chr1:216883400-216884200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:216883400-216884400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:216883600-216883800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr1:216883600-216884200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:216883600-216884200	Enhancers	Left Ventricle	heart
14	chr1:216883600-216894600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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