Variant report

Variant	rs12754372
Chromosome Location	chr1:216853179-216853180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11117642	0.85[CHB][hapmap];0.89[GIH][hapmap];0.83[MEX][hapmap];0.90[MKK][hapmap]
rs11117643	0.89[GIH][hapmap];0.83[MEX][hapmap]
rs11117656	0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12027901	0.89[GIH][hapmap];0.83[MEX][hapmap]
rs12028510	0.94[GIH][hapmap];0.87[MEX][hapmap];0.87[AMR][1000 genomes]
rs1498278	0.93[YRI][hapmap]
rs17043350	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2789718	0.90[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.81[JPT][hapmap]
rs2820879	0.90[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.81[JPT][hapmap]
rs4846616	0.85[CHB][hapmap];0.89[GIH][hapmap]
rs4846644	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12754372	TMEM194B	trans	lymphoblastoid	seeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216787400-216853800	Weak transcription	Pancreas	Pancrea
2	chr1:216814000-216856200	Weak transcription	Psoas Muscle	Psoas
3	chr1:216820400-216855400	Weak transcription	Fetal Heart	heart
4	chr1:216826000-216856200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:216834400-216860400	Weak transcription	Right Ventricle	heart
6	chr1:216840200-216863600	Weak transcription	Fetal Intestine Small	intestine
7	chr1:216840400-216853600	Weak transcription	Fetal Intestine Large	intestine
8	chr1:216842200-216855400	Weak transcription	Fetal Stomach	stomach
9	chr1:216844000-216860000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:216844200-216861000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr1:216850800-216860000	Weak transcription	Left Ventricle	heart
12	chr1:216851000-216855400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:216851000-216866000	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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