Variant report

Variant	rs12030413
Chromosome Location	chr1:71541524-71541525
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12035634	0.90[EUR][1000 genomes]
rs12037493	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12039343	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12402041	0.89[AFR][1000 genomes]
rs12405304	0.89[AFR][1000 genomes]
rs12409424	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17090778	0.87[EUR][1000 genomes]
rs17090979	0.89[AFR][1000 genomes]
rs4649934	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs55669216	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55754123	0.89[AFR][1000 genomes]
rs6698339	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs72672976	0.89[AFR][1000 genomes]
rs7531139	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7551958	0.89[AFR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71520600-71544600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:71521400-71544200	Strong transcription	Adipose Nuclei	Adipose
3	chr1:71521800-71544600	Strong transcription	HSMM	muscle
4	chr1:71522000-71543800	Strong transcription	Primary B cells from cord blood	blood
5	chr1:71522000-71544200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:71522000-71544200	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:71522000-71544200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:71522000-71544400	Strong transcription	HMEC	breast
9	chr1:71522200-71544200	Strong transcription	Muscle Satellite Cultured Cells	--
10	chr1:71522200-71544600	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr1:71522400-71544200	Strong transcription	Liver	Liver
12	chr1:71522600-71544200	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr1:71522600-71544200	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr1:71522600-71544400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr1:71522600-71544400	Strong transcription	NH-A	brain
16	chr1:71522800-71544400	Strong transcription	Fetal Thymus	thymus
17	chr1:71522800-71544600	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr1:71522800-71544600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:71523000-71543800	Strong transcription	Duodenum Mucosa	Duodenum
20	chr1:71523000-71544400	Strong transcription	Osteobl	bone
21	chr1:71523000-71544600	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr1:71523000-71544600	Strong transcription	Placenta	Placenta
23	chr1:71523200-71542800	Strong transcription	K562	blood
24	chr1:71523200-71544200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:71523200-71544400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr1:71523400-71544600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr1:71523600-71544000	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr1:71523600-71544200	Strong transcription	Primary B cells from peripheral blood	blood
29	chr1:71523600-71544800	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr1:71523600-71544800	Strong transcription	Fetal Lung	lung
31	chr1:71523800-71544000	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr1:71523800-71544400	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr1:71524000-71542200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr1:71524400-71541600	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr1:71524400-71542200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr1:71524400-71544400	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr1:71524600-71544400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr1:71525000-71544600	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr1:71525200-71543800	Strong transcription	Fetal Intestine Large	intestine
40	chr1:71525400-71544600	Strong transcription	Hela-S3	cervix
41	chr1:71526000-71544400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr1:71526400-71543800	Strong transcription	Brain Anterior Caudate	brain
43	chr1:71526400-71544200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr1:71527000-71544200	Strong transcription	NHDF-Ad	bronchial
45	chr1:71527200-71542000	Strong transcription	Fetal Kidney	kidney
46	chr1:71527400-71544600	Strong transcription	HepG2	liver
47	chr1:71530600-71543800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr1:71530600-71544200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr1:71531200-71541800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr1:71532400-71542400	Strong transcription	Brain Substantia Nigra	brain

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