Variant report

Variant	rs7531139
Chromosome Location	chr1:71556167-71556168
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr1:71556140-71556290	NHDF-neo	bronchial:	n/a	n/a
2	PBX3	chr1:71555539-71556233	SK-N-SH	brain:	n/a	chr1:71556012-71556021

Variant related genes	Relation type
ZRANB2-AS2	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11209732	0.81[EUR][1000 genomes]
rs11209745	0.80[MEX][hapmap]
rs12030413	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12035634	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12037493	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12039343	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs12084460	0.80[MEX][hapmap]
rs12402041	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12405304	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs12405786	0.85[CEU][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs12409424	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17090778	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17090979	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2284363	0.82[EUR][1000 genomes]
rs2300168	0.92[CEU][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs2300177	1.00[ASW][hapmap];0.85[CEU][hapmap];0.83[MEX][hapmap];0.96[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2796199	0.80[MEX][hapmap]
rs4649934	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55669216	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs55754123	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs5675	1.00[ASW][hapmap];0.92[CEU][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6678886	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs6698339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72672976	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs7516464	0.80[MEX][hapmap]
rs7537324	0.81[EUR][1000 genomes]
rs7551958	0.86[CHB][hapmap];0.87[JPT][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71554600-71556600	Enhancers	NHDF-Ad	bronchial
2	chr1:71555000-71556200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:71555000-71556200	Enhancers	Ovary	ovary
4	chr1:71555000-71556400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:71555000-71556600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:71555000-71556600	Enhancers	Placenta Amnion	Placenta Amnion
7	chr1:71555200-71556400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:71555200-71556400	Enhancers	NH-A	brain
9	chr1:71555200-71556600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:71555400-71556200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
11	chr1:71555400-71556200	Enhancers	HMEC	breast
12	chr1:71555400-71556200	Enhancers	NHEK	skin
13	chr1:71555400-71556400	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr1:71555600-71556200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:71555600-71556200	Enhancers	HSMM	muscle
16	chr1:71555600-71556400	Enhancers	HSMMtube	muscle
17	chr1:71555600-71560400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr1:71555800-71556200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:71555800-71556200	Flanking Active TSS	Osteobl	bone
20	chr1:71555800-71556400	Enhancers	NHLF	lung
21	chr1:71555800-71556600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr1:71556000-71556200	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr1:71556000-71556600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:71556000-71556600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr1:71556000-71556600	Enhancers	Small Intestine	intestine
26	chr1:71556000-71559800	Weak transcription	Colon Smooth Muscle	Colon

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