Variant report

Variant	rs6698339
Chromosome Location	chr1:71559236-71559237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:71559221..71560259-chr1:72503170..72503778,3	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11209732	0.80[EUR][1000 genomes]
rs12030413	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12035634	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12037493	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12039343	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs12402041	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12405304	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs12405786	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs12409424	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17090778	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17090979	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2284363	0.81[EUR][1000 genomes]
rs2300168	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs2300177	0.85[CEU][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4649934	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55669216	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs55754123	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs5675	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6678886	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs72672976	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs7531139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7537324	0.80[EUR][1000 genomes]
rs7551958	0.87[CHB][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71555600-71560400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr1:71556000-71559800	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:71556400-71559600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr1:71556400-71560800	Weak transcription	HSMMtube	muscle

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