Variant report
| Variant | rs7551958 |
|---|---|
| Chromosome Location | chr1:71665096-71665097 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:71662550..71665187-chr1:71831887..71834481,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000226324 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs12030413 | 0.89[AFR][1000 genomes] |
| rs12035634 | 0.89[AMR][1000 genomes] |
| rs12037493 | 0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12039343 | 0.89[AFR][1000 genomes] |
| rs12402041 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12405304 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12408133 | 0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12409424 | 0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs17090778 | 0.87[CHB][hapmap];0.92[AMR][1000 genomes] |
| rs17090979 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17091107 | 0.82[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2300177 | 0.85[AMR][1000 genomes] |
| rs4649934 | 0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs55669216 | 0.89[AFR][1000 genomes] |
| rs55754123 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6698339 | 0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs72672976 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs72674919 | 0.84[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs72674932 | 0.82[AMR][1000 genomes] |
| rs7531139 | 0.86[CHB][hapmap];0.87[JPT][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv997782 | chr1:71628776-71668906 | Enhancers Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv949599 | chr1:71655652-72327802 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
