Variant report

Variant	rs12084460
Chromosome Location	chr1:71556842-71556843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:71545618..71549519-chr1:71556645..71559199,4	K562	blood:

Variant related genes	Relation type
ENSG00000229956	Chromatin interaction
ENSG00000132485	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10493481	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs11209745	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11209747	0.84[ASN][1000 genomes]
rs1138177	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12035210	1.00[CEU][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs12131265	0.81[CHD][hapmap];0.94[JPT][hapmap]
rs12748649	0.84[ASN][1000 genomes]
rs1431504	0.89[YRI][hapmap]
rs2639330	0.81[AFR][1000 genomes]
rs2639331	0.82[AFR][1000 genomes]
rs2639338	0.86[AFR][1000 genomes]
rs2796190	0.81[AFR][1000 genomes]
rs2796192	0.81[AFR][1000 genomes]
rs2796199	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2796203	0.94[JPT][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes]
rs2817869	0.92[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs4272572	0.92[CHB][hapmap];0.83[CHD][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs4425938	0.86[AFR][1000 genomes]
rs4579709	0.83[YRI][hapmap];0.83[AFR][1000 genomes]
rs66461782	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6680193	0.84[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs7411	0.92[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs7516464	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7519104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7522835	0.88[YRI][hapmap];0.87[AFR][1000 genomes]
rs7531139	0.80[MEX][hapmap]
rs7551789	0.91[ASW][hapmap];0.84[LWK][hapmap];0.91[MKK][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes]
rs880098	0.81[ASN][1000 genomes]
rs9424959	0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs9425055	0.91[ASW][hapmap];0.84[LWK][hapmap];0.80[MKK][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes]
rs952337	0.94[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes]
rs9783035	0.87[AFR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71555600-71560400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr1:71556000-71559800	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:71556400-71559600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr1:71556400-71560800	Weak transcription	HSMMtube	muscle
5	chr1:71556600-71557800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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