Variant report

Variant	rs4272572
Chromosome Location	chr1:71561084-71561085
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:71557305..71559385-chr1:71560136..71562584,2	K562	blood:

Variant related genes	Relation type
ENSG00000229956	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1009311	0.85[ASN][1000 genomes]
rs10493481	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11209743	0.93[ASN][1000 genomes]
rs11209745	0.92[CHB][hapmap];0.83[CHD][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs11209747	1.00[ASN][1000 genomes]
rs11209756	0.81[ASN][1000 genomes]
rs1138177	0.80[ASN][1000 genomes]
rs12084460	0.92[CHB][hapmap];0.83[CHD][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs12118599	0.85[ASN][1000 genomes]
rs12119958	0.81[ASN][1000 genomes]
rs12131265	0.97[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap]
rs12139565	0.88[ASN][1000 genomes]
rs12729268	0.85[ASN][1000 genomes]
rs12748649	1.00[ASN][1000 genomes]
rs1418449	0.88[ASN][1000 genomes]
rs1546809	0.81[ASN][1000 genomes]
rs1573061	0.85[ASN][1000 genomes]
rs17090825	0.83[CHB][hapmap]
rs1832900	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1954285	0.85[ASN][1000 genomes]
rs2066371	0.85[ASN][1000 genomes]
rs2066373	0.81[ASN][1000 genomes]
rs2300178	0.80[CHD][hapmap]
rs2639329	0.85[ASN][1000 genomes]
rs2639330	0.81[ASN][1000 genomes]
rs2639335	0.85[ASN][1000 genomes]
rs2639338	0.85[ASN][1000 genomes]
rs2694954	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2790675	0.81[ASN][1000 genomes]
rs2796187	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2796188	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2796189	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2796190	0.83[ASN][1000 genomes]
rs2796192	0.81[ASN][1000 genomes]
rs2796196	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2796199	0.92[CHB][hapmap];0.83[CHD][hapmap];0.94[JPT][hapmap]
rs2796201	0.85[ASN][1000 genomes]
rs2796202	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2796203	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2817864	0.80[CHD][hapmap]
rs2817869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4367753	0.92[ASN][1000 genomes]
rs4397614	0.85[ASN][1000 genomes]
rs4425938	0.85[ASN][1000 genomes]
rs66461782	0.80[ASN][1000 genomes]
rs6680193	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7411	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7516464	0.92[CHB][hapmap];0.83[CHD][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs7519104	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs7556111	0.92[ASN][1000 genomes]
rs880098	0.96[ASN][1000 genomes]
rs952337	1.00[JPT][hapmap];0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4272572	PTGER3	cis	uninvolved skin	skin_eQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71560000-71561200	Enhancers	Fetal Brain Male	brain
2	chr1:71560400-71561600	Enhancers	Rectal Mucosa Donor 31	rectum

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