Variant report

Variant	rs7519104
Chromosome Location	chr1:71548467-71548468
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10493481	0.93[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs11209743	0.81[ASN][1000 genomes]
rs11209745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11209747	0.81[ASN][1000 genomes]
rs1138177	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12035210	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs12084460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12131265	0.94[JPT][hapmap]
rs12748649	0.81[ASN][1000 genomes]
rs1431504	0.89[YRI][hapmap]
rs2639331	0.81[AFR][1000 genomes]
rs2639338	0.85[AFR][1000 genomes]
rs2796199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2796203	0.94[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs2817869	0.93[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs4272572	0.92[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs4425938	0.85[AFR][1000 genomes]
rs4579709	0.82[AFR][1000 genomes]
rs66461782	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6680193	0.85[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs7411	0.93[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs7516464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7522835	0.89[YRI][hapmap];0.86[AFR][1000 genomes]
rs7551789	0.83[YRI][hapmap];0.82[AFR][1000 genomes]
rs880098	0.83[ASN][1000 genomes]
rs9424959	0.89[YRI][hapmap];0.86[AFR][1000 genomes]
rs9425055	0.83[YRI][hapmap];0.82[AFR][1000 genomes]
rs952337	0.94[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs9783035	0.86[AFR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71546800-71551000	Weak transcription	Spleen	Spleen
2	chr1:71547600-71548600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr1:71547600-71548600	Weak transcription	Brain Anterior Caudate	brain
4	chr1:71547600-71549400	Enhancers	Brain Cingulate Gyrus	brain
5	chr1:71547600-71549600	Enhancers	Brain Hippocampus Middle	brain
6	chr1:71547600-71551000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:71547600-71551400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr1:71547600-71551600	Weak transcription	HSMMtube	muscle
9	chr1:71547600-71551600	Weak transcription	NHDF-Ad	bronchial
10	chr1:71547600-71551800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:71547600-71555200	Weak transcription	Lung	lung
12	chr1:71547600-71555800	Weak transcription	NHLF	lung
13	chr1:71547800-71548800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr1:71547800-71548800	Enhancers	Brain Substantia Nigra	brain
15	chr1:71547800-71549600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:71547800-71550800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:71547800-71551200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr1:71547800-71551400	Weak transcription	NHEK	skin
19	chr1:71547800-71551600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr1:71547800-71551600	Weak transcription	Fetal Intestine Small	intestine
21	chr1:71547800-71551600	Weak transcription	HSMM	muscle
22	chr1:71547800-71551800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:71547800-71551800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr1:71547800-71551800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr1:71547800-71554600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr1:71548000-71548800	Enhancers	Dnd41	blood
27	chr1:71548200-71548600	Weak transcription	K562	blood

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