Variant report

Variant	rs10493481
Chromosome Location	chr1:71552278-71552279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:71546796..71548438-chr1:71551662..71553481,2	MCF-7	breast:
2	chr1:71546438..71549487-chr1:71551698..71554336,3	MCF-7	breast:
3	chr1:71547040..71549249-chr1:71549673..71553160,6	K562	blood:

Variant related genes	Relation type
ENSG00000132485	Chromatin interaction
ENSG00000229956	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1009311	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1022527	0.83[AMR][1000 genomes]
rs1022529	0.83[AMR][1000 genomes]
rs10399704	0.88[AMR][1000 genomes]
rs10399705	0.88[AMR][1000 genomes]
rs10399706	0.88[AMR][1000 genomes]
rs10399797	0.89[AMR][1000 genomes]
rs11209736	0.88[AMR][1000 genomes]
rs11209739	0.89[AMR][1000 genomes]
rs11209740	0.89[AMR][1000 genomes]
rs11209743	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11209745	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs11209747	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11209756	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12084460	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs12118599	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12119958	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12120041	0.84[AMR][1000 genomes]
rs12131265	0.92[CEU][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs12134962	0.83[AMR][1000 genomes]
rs12139565	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12139719	0.88[AMR][1000 genomes]
rs12139935	0.88[AMR][1000 genomes]
rs12729268	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12739047	0.88[AMR][1000 genomes]
rs12739685	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12748649	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12756951	0.88[AMR][1000 genomes]
rs12757161	0.86[AMR][1000 genomes]
rs1418449	0.82[ASN][1000 genomes]
rs17090825	0.84[CHB][hapmap]
rs1832900	0.84[ASN][1000 genomes]
rs2066373	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2143157	0.81[AMR][1000 genomes]
rs2179412	0.81[AMR][1000 genomes]
rs2300178	0.89[AMR][1000 genomes]
rs2796196	0.85[ASN][1000 genomes]
rs2796199	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs2796203	1.00[JPT][hapmap]
rs2817864	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2817869	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2901523	0.83[AMR][1000 genomes]
rs4128461	1.00[CEU][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs4272572	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4367753	0.85[ASN][1000 genomes]
rs4397614	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4520371	1.00[CEU][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs4650099	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4650100	0.96[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs6680193	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7411	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7516464	0.92[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs7519104	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs7525785	0.81[AMR][1000 genomes]
rs7556111	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8179367	0.88[AMR][1000 genomes]
rs8179390	0.85[AMR][1000 genomes]
rs8179408	0.89[AMR][1000 genomes]
rs880098	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs952337	1.00[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10493481	PTGER3	cis	Skin Sun Exposed Lower leg	GTEx
rs10493481	PTGER3	cis	uninvolved skin	skin_eQTL

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71547600-71555200	Weak transcription	Lung	lung
2	chr1:71547600-71555800	Weak transcription	NHLF	lung
3	chr1:71547800-71554600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:71549600-71555200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:71550800-71553400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:71551200-71552400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:71551400-71552400	Enhancers	NHEK	skin
8	chr1:71551400-71553000	Weak transcription	Spleen	Spleen
9	chr1:71551400-71553200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr1:71551600-71552400	Enhancers	Fetal Heart	heart
11	chr1:71551600-71552400	Enhancers	NHDF-Ad	bronchial
12	chr1:71551600-71552600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:71551800-71552400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:71551800-71552400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr1:71551800-71552600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:71552000-71554800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:71552000-71555200	Weak transcription	NH-A	brain
18	chr1:71552000-71555600	Weak transcription	HSMMtube	muscle
19	chr1:71552200-71552600	Weak transcription	HSMM	muscle

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