Variant report

Variant	rs1832900
Chromosome Location	chr1:71619556-71619557
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1009311	0.94[ASN][1000 genomes]
rs10493481	0.84[ASN][1000 genomes]
rs11209743	0.87[ASN][1000 genomes]
rs11209747	0.90[ASN][1000 genomes]
rs11209756	0.90[ASN][1000 genomes]
rs11209757	0.85[ASN][1000 genomes]
rs12118599	0.94[ASN][1000 genomes]
rs12119958	0.90[ASN][1000 genomes]
rs12139565	0.98[ASN][1000 genomes]
rs12729268	0.94[ASN][1000 genomes]
rs12748649	0.90[ASN][1000 genomes]
rs1418449	0.98[ASN][1000 genomes]
rs1546809	0.90[ASN][1000 genomes]
rs1573061	0.94[ASN][1000 genomes]
rs1954285	0.94[ASN][1000 genomes]
rs2066371	0.94[ASN][1000 genomes]
rs2066373	0.90[ASN][1000 genomes]
rs2639329	0.94[ASN][1000 genomes]
rs2639330	0.90[ASN][1000 genomes]
rs2639331	0.85[ASN][1000 genomes]
rs2639335	0.94[ASN][1000 genomes]
rs2639338	0.94[ASN][1000 genomes]
rs2694954	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2790675	0.90[ASN][1000 genomes]
rs2796187	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2796188	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2796189	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2796190	0.92[ASN][1000 genomes]
rs2796192	0.90[ASN][1000 genomes]
rs2796196	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2796201	0.94[ASN][1000 genomes]
rs2796202	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2796203	0.92[ASN][1000 genomes]
rs2817869	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4272572	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4367753	0.98[ASN][1000 genomes]
rs4397614	0.94[ASN][1000 genomes]
rs4425938	0.94[ASN][1000 genomes]
rs6680193	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7411	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7525499	0.81[ASN][1000 genomes]
rs7556111	0.98[ASN][1000 genomes]
rs880098	0.86[ASN][1000 genomes]
rs952337	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521769	chr1:71578442-71633719	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv947533	chr1:71585150-71624438	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv870650	chr1:71590877-71642977	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3362305	chr1:71594980-71631787	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv818211	chr1:71603703-71633719	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71618000-71623800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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