Variant report

Variant	rs1573061
Chromosome Location	chr1:71668906-71668907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:71654729..71657445-chr1:71668068..71670402,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1009311	1.00[ASN][1000 genomes]
rs10493481	1.00[JPT][hapmap]
rs11209743	0.82[ASN][1000 genomes]
rs11209745	0.85[CHD][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap]
rs11209747	0.85[ASN][1000 genomes]
rs11209756	0.96[ASN][1000 genomes]
rs11209757	0.89[ASN][1000 genomes]
rs11209761	0.84[ASN][1000 genomes]
rs11209762	0.84[ASN][1000 genomes]
rs11811835	0.84[ASN][1000 genomes]
rs12084460	0.85[CHD][hapmap];0.94[JPT][hapmap]
rs12118599	1.00[ASN][1000 genomes]
rs12119958	0.96[ASN][1000 genomes]
rs12131265	1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap]
rs12139565	0.96[ASN][1000 genomes]
rs12729268	1.00[ASN][1000 genomes]
rs12737582	0.84[ASN][1000 genomes]
rs12744775	0.84[ASN][1000 genomes]
rs12748649	0.85[ASN][1000 genomes]
rs1367767	0.84[ASN][1000 genomes]
rs1395289	0.84[ASN][1000 genomes]
rs1418449	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1431504	0.89[YRI][hapmap]
rs1546809	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1832900	0.94[ASN][1000 genomes]
rs1954285	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066371	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066373	0.96[ASN][1000 genomes]
rs2639329	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2639330	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2639331	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2639335	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2639338	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2694954	0.96[ASN][1000 genomes]
rs2790675	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2796187	0.98[ASN][1000 genomes]
rs2796188	0.98[ASN][1000 genomes]
rs2796189	0.98[ASN][1000 genomes]
rs2796190	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2796192	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2796196	0.92[ASN][1000 genomes]
rs2796199	0.85[CHD][hapmap];0.94[JPT][hapmap]
rs2796201	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2796202	1.00[ASN][1000 genomes]
rs2796203	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2817869	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4272572	0.94[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4367753	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4397614	1.00[ASN][1000 genomes]
rs4425938	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4579709	0.83[YRI][hapmap]
rs6680193	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7411	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7516464	0.85[CHD][hapmap];0.94[JPT][hapmap]
rs7519104	0.94[JPT][hapmap]
rs7522835	0.88[YRI][hapmap]
rs7525499	0.85[ASN][1000 genomes]
rs7551789	0.83[YRI][hapmap]
rs7556111	0.92[ASN][1000 genomes]
rs880098	0.81[ASN][1000 genomes]
rs9424959	0.89[YRI][hapmap]
rs9425055	0.83[YRI][hapmap]
rs952337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997782	chr1:71628776-71668906	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1573061	PTGER3	cis	uninvolved skin	skin_eQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71665600-71672400	Weak transcription	Pancreas	Pancrea

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