Variant report

Variant	rs6680193
Chromosome Location	chr1:71556899-71556900
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:71545618..71549519-chr1:71556645..71559199,4	K562	blood:

Variant related genes	Relation type
ENSG00000132485	Chromatin interaction
ENSG00000229956	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1009311	0.85[ASN][1000 genomes]
rs10493481	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11209743	0.93[ASN][1000 genomes]
rs11209745	0.84[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs11209747	1.00[ASN][1000 genomes]
rs11209756	0.81[ASN][1000 genomes]
rs1138177	0.80[ASN][1000 genomes]
rs12084460	0.84[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs12118599	0.85[ASN][1000 genomes]
rs12119958	0.81[ASN][1000 genomes]
rs12131265	1.00[JPT][hapmap]
rs12139565	0.88[ASN][1000 genomes]
rs12729268	0.85[ASN][1000 genomes]
rs12748649	1.00[ASN][1000 genomes]
rs1418449	0.88[ASN][1000 genomes]
rs1546809	0.81[ASN][1000 genomes]
rs1573061	0.85[ASN][1000 genomes]
rs1832900	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1954285	0.85[ASN][1000 genomes]
rs2066371	0.85[ASN][1000 genomes]
rs2066373	0.81[ASN][1000 genomes]
rs2639329	0.85[ASN][1000 genomes]
rs2639330	0.81[ASN][1000 genomes]
rs2639335	0.85[ASN][1000 genomes]
rs2639338	0.85[ASN][1000 genomes]
rs2694954	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2790675	0.81[ASN][1000 genomes]
rs2796187	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2796188	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2796189	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2796190	0.83[ASN][1000 genomes]
rs2796192	0.81[ASN][1000 genomes]
rs2796196	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2796199	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs2796201	0.85[ASN][1000 genomes]
rs2796202	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2796203	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2817869	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4272572	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4367753	0.92[ASN][1000 genomes]
rs4397614	0.85[ASN][1000 genomes]
rs4425938	0.85[ASN][1000 genomes]
rs66461782	0.80[ASN][1000 genomes]
rs7411	0.90[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7516464	0.84[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs7519104	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs7556111	0.92[ASN][1000 genomes]
rs880098	0.96[ASN][1000 genomes]
rs952337	1.00[JPT][hapmap];0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6680193	PTGER3	cis	uninvolved skin	skin_eQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71555600-71560400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr1:71556000-71559800	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:71556400-71559600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr1:71556400-71560800	Weak transcription	HSMMtube	muscle
5	chr1:71556600-71557800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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