Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:71712558-71712852	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000237726	TF binding region

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11209745	0.94[YRI][hapmap]
rs12040916	0.81[CHB][hapmap]
rs12084460	0.89[YRI][hapmap]
rs12747444	0.82[AFR][1000 genomes]
rs12749022	0.90[ASN][1000 genomes]
rs2639330	0.89[AFR][1000 genomes]
rs2639331	0.85[AFR][1000 genomes]
rs2639338	0.83[AFR][1000 genomes]
rs2796190	0.83[AFR][1000 genomes]
rs2796192	0.89[AFR][1000 genomes]
rs2796199	0.89[YRI][hapmap]
rs2796203	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs4579709	0.81[CHB][hapmap];0.89[YRI][hapmap]
rs7516464	0.82[YRI][hapmap]
rs7519104	0.89[YRI][hapmap]
rs7522835	0.80[CHB][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs7549846	0.81[CHB][hapmap]
rs7551789	0.83[JPT][hapmap];0.94[YRI][hapmap]
rs9424959	0.81[CHB][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs9425055	0.83[JPT][hapmap];0.94[YRI][hapmap]
rs952337	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs9783035	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1005726	chr1:71701840-71953242	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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