Variant report

Variant	rs12747444
Chromosome Location	chr1:71634219-71634220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12030383	0.85[ASN][1000 genomes]
rs12031954	0.86[ASN][1000 genomes]
rs12034611	0.85[ASN][1000 genomes]
rs12040916	0.92[ASN][1000 genomes]
rs12078399	0.86[ASN][1000 genomes]
rs1431503	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1431504	0.82[AFR][1000 genomes]
rs17091046	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3765414	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4425938	0.83[AFR][1000 genomes]
rs4579709	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7522835	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7535749	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7549846	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7551789	0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs9424959	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9425055	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9783035	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870650	chr1:71590877-71642977	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv997782	chr1:71628776-71668906	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71625400-71637800	Weak transcription	Pancreas	Pancrea
2	chr1:71632800-71634800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:71633800-71635800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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