Variant report

Variant	rs12040916
Chromosome Location	chr1:71550203-71550204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:71547040..71549249-chr1:71549673..71553160,6	K562	blood:

Variant related genes	Relation type
ENSG00000229956	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12747444	0.92[ASN][1000 genomes]
rs1431503	0.86[ASN][1000 genomes]
rs1431504	0.81[CHB][hapmap]
rs35631379	1.00[AFR][1000 genomes]
rs3765414	0.95[ASN][1000 genomes]
rs4579709	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7522835	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7549846	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs7551789	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9424959	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9425055	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9783035	0.98[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71546800-71551000	Weak transcription	Spleen	Spleen
2	chr1:71547600-71551000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:71547600-71551400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr1:71547600-71551600	Weak transcription	HSMMtube	muscle
5	chr1:71547600-71551600	Weak transcription	NHDF-Ad	bronchial
6	chr1:71547600-71551800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:71547600-71555200	Weak transcription	Lung	lung
8	chr1:71547600-71555800	Weak transcription	NHLF	lung
9	chr1:71547800-71550800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:71547800-71551200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:71547800-71551400	Weak transcription	NHEK	skin
12	chr1:71547800-71551600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:71547800-71551600	Weak transcription	Fetal Intestine Small	intestine
14	chr1:71547800-71551600	Weak transcription	HSMM	muscle
15	chr1:71547800-71551800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:71547800-71551800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr1:71547800-71551800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr1:71547800-71554600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr1:71549600-71555200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr1:71550200-71551000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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