Variant report

Variant	rs9424959
Chromosome Location	chr1:71558452-71558453
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:71545618..71549519-chr1:71556645..71559199,4	K562	blood:

Variant related genes	Relation type
ENSG00000229956	Chromatin interaction
ENSG00000132485	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11209745	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs1138177	0.82[AFR][1000 genomes]
rs12040916	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12084460	0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs12747444	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1431503	0.86[ASN][1000 genomes]
rs1431504	0.81[CHB][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs2796199	0.89[YRI][hapmap]
rs2796203	1.00[YRI][hapmap]
rs3765414	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4579709	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66461782	0.82[AFR][1000 genomes]
rs7516464	0.82[YRI][hapmap]
rs7519104	0.89[YRI][hapmap]
rs7522835	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7549846	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7551789	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9425055	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs952337	1.00[YRI][hapmap]
rs9783035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71555600-71560400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr1:71556000-71559800	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:71556400-71559600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr1:71556400-71560800	Weak transcription	HSMMtube	muscle

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