Variant report

Variant	rs7549846
Chromosome Location	chr1:71548122-71548123
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:71511577..71513859-chr1:71544920..71548466,4	K562	blood:
2	chr1:70709756..70712647-chr1:71546604..71549117,2	MCF-7	breast:
3	chr1:71545618..71549519-chr1:71556645..71559199,4	K562	blood:
4	chr1:71547078..71549094-chr1:71556895..71558894,2	K562	blood:

Variant related genes	Relation type
ENSG00000050628	Chromatin interaction
ENSG00000116754	Chromatin interaction
ENSG00000229956	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12040916	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs12747444	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1431503	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1431504	0.81[CHB][hapmap]
rs3765414	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4579709	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7522835	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7551789	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs9424959	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425055	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9783035	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71546800-71551000	Weak transcription	Spleen	Spleen
2	chr1:71547600-71548400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:71547600-71548600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:71547600-71548600	Weak transcription	Brain Anterior Caudate	brain
5	chr1:71547600-71549400	Enhancers	Brain Cingulate Gyrus	brain
6	chr1:71547600-71549600	Enhancers	Brain Hippocampus Middle	brain
7	chr1:71547600-71551000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:71547600-71551400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr1:71547600-71551600	Weak transcription	HSMMtube	muscle
10	chr1:71547600-71551600	Weak transcription	NHDF-Ad	bronchial
11	chr1:71547600-71551800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:71547600-71555200	Weak transcription	Lung	lung
13	chr1:71547600-71555800	Weak transcription	NHLF	lung
14	chr1:71547800-71548200	Enhancers	HepG2	liver
15	chr1:71547800-71548800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr1:71547800-71548800	Enhancers	Brain Substantia Nigra	brain
17	chr1:71547800-71549600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:71547800-71550800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:71547800-71551200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr1:71547800-71551400	Weak transcription	NHEK	skin
21	chr1:71547800-71551600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr1:71547800-71551600	Weak transcription	Fetal Intestine Small	intestine
23	chr1:71547800-71551600	Weak transcription	HSMM	muscle
24	chr1:71547800-71551800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:71547800-71551800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr1:71547800-71551800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr1:71547800-71554600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr1:71548000-71548200	Enhancers	K562	blood
29	chr1:71548000-71548800	Enhancers	Dnd41	blood

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