Variant report

Variant	rs11209757
Chromosome Location	chr1:71728900-71728901
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1009311	0.89[ASN][1000 genomes]
rs10493481	0.94[JPT][hapmap]
rs11209745	0.88[JPT][hapmap]
rs11209756	0.93[ASN][1000 genomes]
rs11209761	0.92[ASN][1000 genomes]
rs11209762	0.92[ASN][1000 genomes]
rs11811835	0.92[ASN][1000 genomes]
rs12084460	0.88[JPT][hapmap]
rs12118599	0.89[ASN][1000 genomes]
rs12119958	0.93[ASN][1000 genomes]
rs12131265	0.82[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap]
rs12139565	0.87[ASN][1000 genomes]
rs12140289	0.85[ASN][1000 genomes]
rs12729268	0.89[ASN][1000 genomes]
rs12737582	0.92[ASN][1000 genomes]
rs12744775	0.92[ASN][1000 genomes]
rs1367767	0.92[ASN][1000 genomes]
rs1395289	0.92[ASN][1000 genomes]
rs1418449	0.87[ASN][1000 genomes]
rs1546809	0.93[ASN][1000 genomes]
rs1573061	0.89[ASN][1000 genomes]
rs17090825	0.90[CHB][hapmap]
rs1832900	0.85[ASN][1000 genomes]
rs1954285	0.89[ASN][1000 genomes]
rs2066371	0.89[ASN][1000 genomes]
rs2066373	0.93[ASN][1000 genomes]
rs2639329	0.89[ASN][1000 genomes]
rs2639330	0.93[ASN][1000 genomes]
rs2639331	0.88[ASN][1000 genomes]
rs2639335	0.89[ASN][1000 genomes]
rs2639338	0.89[ASN][1000 genomes]
rs2694954	0.93[ASN][1000 genomes]
rs2790675	0.93[ASN][1000 genomes]
rs2796187	0.91[ASN][1000 genomes]
rs2796188	0.91[ASN][1000 genomes]
rs2796189	0.91[ASN][1000 genomes]
rs2796190	0.91[ASN][1000 genomes]
rs2796192	0.93[ASN][1000 genomes]
rs2796196	0.84[ASN][1000 genomes]
rs2796199	0.88[JPT][hapmap]
rs2796201	0.89[ASN][1000 genomes]
rs2796202	0.89[ASN][1000 genomes]
rs2796203	0.81[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs4272572	0.89[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap]
rs4367753	0.84[ASN][1000 genomes]
rs4397614	0.89[ASN][1000 genomes]
rs4425938	0.89[ASN][1000 genomes]
rs6680193	0.94[JPT][hapmap]
rs7411	0.93[JPT][hapmap]
rs7519104	0.88[JPT][hapmap]
rs7525499	0.93[ASN][1000 genomes]
rs7556111	0.84[ASN][1000 genomes]
rs952337	0.82[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1005726	chr1:71701840-71953242	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv1848377	chr1:71718838-71964514	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv531880	chr1:71724941-71964501	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71727200-71733000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr1:71728400-71729000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:71728400-71729000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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