Variant report

Variant	rs12050867
Chromosome Location	chr15:35484706-35484707
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10438396	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10459605	0.90[ASN][1000 genomes]
rs11073087	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12232264	0.88[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs12442121	0.93[ASN][1000 genomes]
rs12442485	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12442665	0.84[ASN][1000 genomes]
rs12443405	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13313434	0.93[ASN][1000 genomes]
rs13313482	0.93[ASN][1000 genomes]
rs16960581	0.83[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16960610	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28461423	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2879579	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4923920	0.83[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs4923933	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4924610	0.93[ASN][1000 genomes]
rs4924647	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58543772	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs58808674	0.93[ASN][1000 genomes]
rs59700514	0.93[ASN][1000 genomes]
rs59937499	0.93[ASN][1000 genomes]
rs61284677	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72486693	0.93[ASN][1000 genomes]
rs72707064	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72707065	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72707069	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72707070	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72707073	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv904073	chr15:35467096-35686267	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35483600-35485000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
2	chr15:35484200-35485000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
3	chr15:35484200-35502000	Weak transcription	Left Ventricle	heart
4	chr15:35484400-35484800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
5	chr15:35484400-35485200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr15:35484400-35486600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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