Variant report

Variant	rs59937499
Chromosome Location	chr15:35482780-35482781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10438396	0.98[ASN][1000 genomes]
rs10459605	0.96[ASN][1000 genomes]
rs11073087	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12050867	0.93[ASN][1000 genomes]
rs12232264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12442121	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12442485	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12442665	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12443405	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13313434	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13313482	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16960581	0.99[ASN][1000 genomes]
rs16960610	0.98[ASN][1000 genomes]
rs28461423	0.99[ASN][1000 genomes]
rs2879579	0.98[ASN][1000 genomes]
rs4923920	0.99[ASN][1000 genomes]
rs4923933	0.96[ASN][1000 genomes]
rs4924610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4924647	0.96[ASN][1000 genomes]
rs58543772	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58808674	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59700514	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61284677	0.98[ASN][1000 genomes]
rs72486693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707064	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72707065	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72707069	0.96[ASN][1000 genomes]
rs72707070	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72707073	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv904073	chr15:35467096-35686267	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35474000-35483800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:35481000-35484000	Weak transcription	Left Ventricle	heart
3	chr15:35482400-35482800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr15:35482400-35482800	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links