Variant report

Variant	rs16960610
Chromosome Location	chr15:35477692-35477693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:35461196..35463011-chr15:35475890..35477698,2	K562	blood:

Variant related genes	Relation type
ENSG00000259336	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10438396	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10459605	0.94[ASN][1000 genomes]
rs11073087	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12050867	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12232264	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12442121	0.98[ASN][1000 genomes]
rs12442485	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12442665	0.89[ASN][1000 genomes]
rs12443405	0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13313434	0.98[ASN][1000 genomes]
rs13313482	0.98[ASN][1000 genomes]
rs16960581	0.94[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28461423	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2879579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4923920	0.95[CHB][hapmap];0.96[JPT][hapmap];0.98[ASN][1000 genomes]
rs4923933	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4924610	0.98[ASN][1000 genomes]
rs4924647	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58543772	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58808674	0.98[ASN][1000 genomes]
rs59700514	0.98[ASN][1000 genomes]
rs59937499	0.98[ASN][1000 genomes]
rs61284677	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72486693	0.98[ASN][1000 genomes]
rs72707064	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs72707065	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs72707069	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72707070	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs72707073	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv904073	chr15:35467096-35686267	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35473200-35478000	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr15:35474000-35483800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:35474200-35478600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:35476000-35477800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
5	chr15:35476000-35477800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
6	chr15:35476000-35478400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr15:35476200-35477800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr15:35476400-35478400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:35476600-35479200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr15:35477000-35477800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
11	chr15:35477000-35478600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr15:35477400-35479000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr15:35477600-35478600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:35477600-35478800	Weak transcription	H1 Cell Line	embryonic stem cell

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