Variant report

Variant	rs58543772
Chromosome Location	chr15:35478165-35478166
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10438396	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10459605	0.94[ASN][1000 genomes]
rs11073087	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12050867	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12232264	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12442121	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12442485	0.98[ASN][1000 genomes]
rs12442665	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12443405	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13313434	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13313482	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16960581	0.98[ASN][1000 genomes]
rs16960610	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28461423	0.98[ASN][1000 genomes]
rs2879579	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4923920	0.98[ASN][1000 genomes]
rs4923933	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4924610	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4924647	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs58808674	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59700514	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59937499	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61284677	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72486693	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72707064	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72707065	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72707069	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72707070	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72707073	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv904073	chr15:35467096-35686267	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35474000-35483800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:35474200-35478600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:35476000-35478400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:35476400-35478400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:35476600-35479200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr15:35477000-35478600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr15:35477400-35479000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr15:35477600-35478600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:35477600-35478800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr15:35477800-35479600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr15:35477800-35479600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr15:35478000-35478400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr15:35478000-35479000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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