Variant report

Variant	rs12054255
Chromosome Location	chr3:86105206-86105207
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10511065	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10511066	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12629171	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12631897	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12633845	1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12635434	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12637221	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12638299	1.00[JPT][hapmap]
rs4133222	1.00[AFR][1000 genomes]
rs55982437	1.00[ASN][1000 genomes]
rs67344309	0.95[ASN][1000 genomes]
rs6806149	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73843571	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73843573	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73845770	0.85[ASN][1000 genomes]
rs7617889	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7629531	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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