Variant report

Variant	rs10511065
Chromosome Location	chr3:86074801-86074802
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10511066	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12054255	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12629171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12631897	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12633845	1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12635434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12637221	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12638299	1.00[JPT][hapmap]
rs4603964	1.00[JPT][hapmap]
rs55982437	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56069708	1.00[EUR][1000 genomes]
rs56161483	1.00[EUR][1000 genomes]
rs56294119	1.00[EUR][1000 genomes]
rs56670526	1.00[EUR][1000 genomes]
rs57014811	1.00[EUR][1000 genomes]
rs57553223	1.00[EUR][1000 genomes]
rs57836669	1.00[EUR][1000 genomes]
rs60300179	1.00[EUR][1000 genomes]
rs67344309	0.95[ASN][1000 genomes]
rs6773643	1.00[EUR][1000 genomes]
rs6779407	1.00[EUR][1000 genomes]
rs6787552	1.00[EUR][1000 genomes]
rs6806149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72914424	1.00[EUR][1000 genomes]
rs72916530	1.00[EUR][1000 genomes]
rs72916536	1.00[EUR][1000 genomes]
rs72916558	1.00[EUR][1000 genomes]
rs72916580	1.00[EUR][1000 genomes]
rs72916583	1.00[EUR][1000 genomes]
rs72918524	1.00[EUR][1000 genomes]
rs72918529	1.00[EUR][1000 genomes]
rs73843514	1.00[EUR][1000 genomes]
rs73843563	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73843564	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73843567	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73843570	1.00[EUR][1000 genomes]
rs73843571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73843573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73845687	1.00[EUR][1000 genomes]
rs73845724	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73845770	0.85[ASN][1000 genomes]
rs73845771	1.00[EUR][1000 genomes]
rs73845778	1.00[EUR][1000 genomes]
rs73847404	1.00[EUR][1000 genomes]
rs7617889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7629531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877112	chr3:85964737-86083716	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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