Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12059277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12082989	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12087087	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12087658	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12090411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12094026	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12094349	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12095533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12095682	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56187725	1.00[EUR][1000 genomes]
rs59397787	1.00[EUR][1000 genomes]
rs61090558	0.87[AMR][1000 genomes]
rs61469377	1.00[EUR][1000 genomes]
rs6656542	0.86[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6677034	0.88[AFR][1000 genomes]
rs6678883	0.86[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6698072	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126638	1.00[EUR][1000 genomes]
rs74126641	1.00[EUR][1000 genomes]
rs7524859	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7532566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs790060	1.00[EUR][1000 genomes]
rs790061	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	esv3430322	chr1:160851829-160920480	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160905800-160919800	Weak transcription	Right Atrium	heart
2	chr1:160911400-160915800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:160911800-160915000	Weak transcription	Gastric	stomach
4	chr1:160911800-160915000	Weak transcription	Ovary	ovary
5	chr1:160911800-160920800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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