Variant report

Variant	rs6656542
Chromosome Location	chr1:160915721-160915722
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12058351	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12059277	0.92[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12082989	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12087087	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12087658	0.87[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12090411	0.92[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12094026	0.92[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12094349	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12095533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12095682	0.92[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56187725	1.00[EUR][1000 genomes]
rs59397787	1.00[EUR][1000 genomes]
rs61090558	0.87[AMR][1000 genomes]
rs61469377	1.00[EUR][1000 genomes]
rs6677034	0.95[AFR][1000 genomes]
rs6678883	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6698072	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126638	1.00[EUR][1000 genomes]
rs74126641	1.00[EUR][1000 genomes]
rs7524859	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7532566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs790060	1.00[EUR][1000 genomes]
rs790061	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	esv3430322	chr1:160851829-160920480	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160905800-160919800	Weak transcription	Right Atrium	heart
2	chr1:160911400-160915800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:160911800-160920800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:160913200-160916400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:160913200-160916800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:160915000-160916600	Weak transcription	Fetal Intestine Small	intestine
7	chr1:160915200-160915800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:160915200-160916800	Enhancers	A549	lung
9	chr1:160915400-160916000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:160915400-160916200	Enhancers	HMEC	breast
11	chr1:160915400-160916600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr1:160915400-160916600	Weak transcription	Fetal Heart	heart
13	chr1:160915400-160917800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr1:160915400-160918200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:160915400-160918800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:160915600-160916600	Weak transcription	K562	blood
17	chr1:160915600-160917800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:160915600-160917800	Weak transcription	Ovary	ovary
19	chr1:160915600-160918800	Weak transcription	Hela-S3	cervix
20	chr1:160915600-160919400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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