Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:160874204..160876595-chr1:160877694..160880011,2	MCF-7	breast:
2	chr1:160872347..160875327-chr1:160877154..160879416,3	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12058351	1.00[EUR][1000 genomes]
rs12059277	1.00[EUR][1000 genomes]
rs12082989	1.00[EUR][1000 genomes]
rs12087087	1.00[EUR][1000 genomes]
rs12087658	1.00[EUR][1000 genomes]
rs12090411	1.00[EUR][1000 genomes]
rs12094026	1.00[EUR][1000 genomes]
rs12094349	1.00[EUR][1000 genomes]
rs12095533	1.00[EUR][1000 genomes]
rs12095682	1.00[EUR][1000 genomes]
rs56187725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59304310	0.82[AFR][1000 genomes]
rs59397787	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61469377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6656542	1.00[EUR][1000 genomes]
rs6678883	1.00[EUR][1000 genomes]
rs6698072	1.00[EUR][1000 genomes]
rs74126638	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126650	1.00[AMR][1000 genomes]
rs7524859	1.00[EUR][1000 genomes]
rs7532566	1.00[EUR][1000 genomes]
rs790060	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs790061	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	esv3430322	chr1:160851829-160920480	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv947200	chr1:160870136-160905390	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160875400-160880600	Weak transcription	Fetal Intestine Small	intestine
2	chr1:160875600-160880600	Weak transcription	Pancreas	Pancrea
3	chr1:160875800-160879800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:160875800-160880600	Weak transcription	Right Ventricle	heart
5	chr1:160876600-160881200	Weak transcription	Stomach Mucosa	stomach
6	chr1:160877800-160880200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:160878400-160880000	Enhancers	Gastric	stomach
8	chr1:160878400-160880000	Enhancers	Left Ventricle	heart
9	chr1:160879200-160879800	Flanking Active TSS	Fetal Heart	heart
10	chr1:160879200-160881200	Weak transcription	Ovary	ovary
11	chr1:160879200-160881400	Weak transcription	Right Atrium	heart

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