Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12058351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12059277	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12087087	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12087658	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12090411	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12094026	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12094349	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12095533	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12095682	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56187725	1.00[EUR][1000 genomes]
rs59397787	1.00[EUR][1000 genomes]
rs61090558	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61469377	1.00[EUR][1000 genomes]
rs6656542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6678883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6698072	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126638	1.00[EUR][1000 genomes]
rs74126641	1.00[EUR][1000 genomes]
rs7524859	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7532566	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs790060	1.00[EUR][1000 genomes]
rs790061	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	esv3430322	chr1:160851829-160920480	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv947200	chr1:160870136-160905390	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160899800-160905400	Weak transcription	Right Atrium	heart
2	chr1:160905000-160905400	Enhancers	Placenta	Placenta
3	chr1:160905000-160906200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:160905200-160905600	Enhancers	Fetal Muscle Trunk	muscle
5	chr1:160905200-160905600	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr1:160905200-160905800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:160905200-160905800	Bivalent Enhancer	Adipose Nuclei	Adipose
8	chr1:160905200-160905800	Enhancers	HSMMtube	muscle
9	chr1:160905200-160906000	Enhancers	Primary B cells from peripheral blood	blood
10	chr1:160905200-160906000	Enhancers	Fetal Muscle Leg	muscle

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