Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10913680	1.00[EUR][1000 genomes]
rs12066879	1.00[AFR][1000 genomes]
rs12090298	1.00[EUR][1000 genomes]
rs16843624	0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs41476749	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs479185	1.00[EUR][1000 genomes]
rs493630	1.00[EUR][1000 genomes]
rs493657	1.00[EUR][1000 genomes]
rs532194	1.00[EUR][1000 genomes]
rs551742	1.00[EUR][1000 genomes]
rs558496	1.00[EUR][1000 genomes]
rs57282067	1.00[EUR][1000 genomes]
rs57446042	1.00[EUR][1000 genomes]
rs59123048	1.00[EUR][1000 genomes]
rs59949348	1.00[EUR][1000 genomes]
rs642312	1.00[EUR][1000 genomes]
rs6703372	1.00[EUR][1000 genomes]
rs73039305	1.00[EUR][1000 genomes]
rs73039324	1.00[EUR][1000 genomes]
rs73039369	1.00[EUR][1000 genomes]
rs73039392	1.00[EUR][1000 genomes]
rs74126542	1.00[EUR][1000 genomes]
rs74126543	1.00[EUR][1000 genomes]
rs74126545	1.00[EUR][1000 genomes]
rs9970108	1.00[EUR][1000 genomes]
rs9970212	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3512995	chr1:171329123-171994470	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv3512997	chr1:171329123-171994470	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv831893	chr1:171802450-171985000	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171906600-171923200	Weak transcription	Fetal Kidney	kidney
2	chr1:171907000-171923000	Weak transcription	Brain Angular Gyrus	brain
3	chr1:171909400-171922400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr1:171909800-171923200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr1:171916200-171929200	Weak transcription	Pancreas	Pancrea
6	chr1:171917800-171923000	Weak transcription	Brain Substantia Nigra	brain
7	chr1:171920400-171923000	Weak transcription	Fetal Brain Male	brain
8	chr1:171920800-171922000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr1:171920800-171922200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr1:171921200-171923000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr1:171921600-171922800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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