Variant report

Variant	rs551742
Chromosome Location	chr1:172137526-172137527
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172137145..172139186-chr1:173835377..173837374,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185278	Chromatin interaction
ENSG00000234741	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12058617	1.00[EUR][1000 genomes]
rs16843624	1.00[EUR][1000 genomes]
rs479185	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs493630	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs493657	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs530846	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs532194	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs558496	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs609222	1.00[EUR][1000 genomes]
rs642312	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs650603	0.85[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs654524	1.00[EUR][1000 genomes]
rs685039	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73039305	1.00[EUR][1000 genomes]
rs73039324	1.00[EUR][1000 genomes]
rs73039369	1.00[EUR][1000 genomes]
rs73039392	1.00[EUR][1000 genomes]
rs73043064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172123400-172149200	Weak transcription	Brain Anterior Caudate	brain
2	chr1:172125200-172137800	Weak transcription	Fetal Kidney	kidney
3	chr1:172128400-172149800	Weak transcription	Aorta	Aorta
4	chr1:172131000-172137800	Weak transcription	Fetal Stomach	stomach
5	chr1:172132800-172137600	Weak transcription	Pancreas	Pancrea
6	chr1:172132800-172150000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:172133200-172137600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:172133400-172137600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr1:172134000-172137600	Weak transcription	Osteobl	bone
10	chr1:172134000-172139200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:172134200-172137600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr1:172134200-172137600	Weak transcription	Right Atrium	heart
13	chr1:172134800-172139400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr1:172136800-172138200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr1:172136800-172138600	Enhancers	Brain Hippocampus Middle	brain
16	chr1:172136800-172140400	Enhancers	Fetal Heart	heart
17	chr1:172137000-172137800	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr1:172137000-172138000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:172137000-172138000	Active TSS	Duodenum Mucosa	Duodenum
20	chr1:172137000-172138200	Enhancers	HSMMtube	muscle
21	chr1:172137000-172138600	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr1:172137000-172138600	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr1:172137000-172138800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr1:172137000-172138800	Enhancers	NHDF-Ad	bronchial
25	chr1:172137000-172139200	Enhancers	Brain Cingulate Gyrus	brain
26	chr1:172137000-172139600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr1:172137000-172139800	Enhancers	Fetal Lung	lung
28	chr1:172137200-172137600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr1:172137200-172137600	Weak transcription	Brain Angular Gyrus	brain
30	chr1:172137200-172137800	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr1:172137200-172138000	Enhancers	HSMM	muscle
32	chr1:172137200-172138200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr1:172137200-172138400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr1:172137200-172138400	Enhancers	Placenta Amnion	Placenta Amnion
35	chr1:172137200-172138600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr1:172137200-172138600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr1:172137200-172138600	Enhancers	HMEC	breast
38	chr1:172137400-172137800	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr1:172137400-172138000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr1:172137400-172138000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr1:172137400-172138000	Enhancers	Brain Germinal Matrix	brain
42	chr1:172137400-172138000	Enhancers	Right Ventricle	heart
43	chr1:172137400-172138000	Enhancers	A549	lung
44	chr1:172137400-172138000	Enhancers	NHEK	skin
45	chr1:172137400-172138000	Enhancers	NHLF	lung
46	chr1:172137400-172138200	Enhancers	NH-A	brain
47	chr1:172137400-172138600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr1:172137400-172138600	Enhancers	Fetal Intestine Large	intestine
49	chr1:172137400-172138800	Enhancers	Brain Substantia Nigra	brain
50	chr1:172137400-172140200	Enhancers	Fetal Intestine Small	intestine

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