Variant report

Variant	rs73039369
Chromosome Location	chr1:172102700-172102701
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172101341..172102899-chr1:172105210..172106903,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12058617	1.00[EUR][1000 genomes]
rs16843624	1.00[EUR][1000 genomes]
rs41476749	1.00[EUR][1000 genomes]
rs479185	1.00[EUR][1000 genomes]
rs493630	1.00[EUR][1000 genomes]
rs493657	1.00[EUR][1000 genomes]
rs530846	1.00[EUR][1000 genomes]
rs532194	1.00[EUR][1000 genomes]
rs551742	1.00[EUR][1000 genomes]
rs558496	1.00[EUR][1000 genomes]
rs57282067	1.00[EUR][1000 genomes]
rs57446042	1.00[EUR][1000 genomes]
rs59123048	1.00[EUR][1000 genomes]
rs59949348	1.00[EUR][1000 genomes]
rs609222	1.00[EUR][1000 genomes]
rs642312	1.00[EUR][1000 genomes]
rs650603	1.00[EUR][1000 genomes]
rs654524	1.00[EUR][1000 genomes]
rs73039305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73039324	1.00[EUR][1000 genomes]
rs73039392	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73043064	1.00[EUR][1000 genomes]
rs74126542	1.00[EUR][1000 genomes]
rs74126543	1.00[EUR][1000 genomes]
rs74126545	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532342	chr1:171922237-172133785	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172049400-172110800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:172062400-172109200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr1:172077200-172110600	Weak transcription	Brain Angular Gyrus	brain
4	chr1:172085800-172113400	Weak transcription	Pancreas	Pancrea
5	chr1:172090000-172109600	Weak transcription	Brain Germinal Matrix	brain
6	chr1:172090400-172108800	Weak transcription	Fetal Stomach	stomach
7	chr1:172092000-172102800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:172094600-172110600	Weak transcription	Left Ventricle	heart
9	chr1:172096000-172103200	Weak transcription	Gastric	stomach
10	chr1:172096400-172110600	Weak transcription	Brain Substantia Nigra	brain
11	chr1:172100200-172108600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr1:172101200-172107800	Weak transcription	Psoas Muscle	Psoas
13	chr1:172101600-172103800	Strong transcription	Brain Anterior Caudate	brain
14	chr1:172102000-172104000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr1:172102000-172113400	Weak transcription	Lung	lung
16	chr1:172102200-172103200	Strong transcription	Brain Inferior Temporal Lobe	brain
17	chr1:172102200-172103600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:172102400-172106000	Weak transcription	Fetal Muscle Leg	muscle
19	chr1:172102600-172113400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr1:172102600-172113600	Weak transcription	Brain Hippocampus Middle	brain

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