Variant report

Variant	rs642312
Chromosome Location	chr1:172141511-172141512
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12058617	1.00[EUR][1000 genomes]
rs16843624	1.00[EUR][1000 genomes]
rs479185	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs493630	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs493657	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs530846	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs532194	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs551742	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs558496	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs609222	1.00[EUR][1000 genomes]
rs650603	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs654524	1.00[EUR][1000 genomes]
rs685039	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73039305	1.00[EUR][1000 genomes]
rs73039324	1.00[EUR][1000 genomes]
rs73039369	1.00[EUR][1000 genomes]
rs73039392	1.00[EUR][1000 genomes]
rs73043064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172123400-172149200	Weak transcription	Brain Anterior Caudate	brain
2	chr1:172128400-172149800	Weak transcription	Aorta	Aorta
3	chr1:172132800-172150000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:172138000-172143600	Weak transcription	Fetal Brain Male	brain
5	chr1:172138200-172147800	Weak transcription	Brain Angular Gyrus	brain
6	chr1:172138400-172141800	Weak transcription	Osteobl	bone
7	chr1:172138400-172145000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr1:172138400-172149800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:172138600-172141800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:172138600-172143600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr1:172138600-172147600	Weak transcription	Small Intestine	intestine
12	chr1:172138600-172147800	Weak transcription	Brain Hippocampus Middle	brain
13	chr1:172138600-172147800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr1:172139600-172148000	Weak transcription	Fetal Stomach	stomach
15	chr1:172140200-172146800	Weak transcription	Fetal Intestine Small	intestine
16	chr1:172141400-172142000	Enhancers	HSMM	muscle
17	chr1:172141400-172142200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:172141400-172142400	Enhancers	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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