The 2.0 version of rSNPBase

Variant report

Variant rs12060593
Chromosome Location chr1:95440004-95440005
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95422000-95450800 Weak transcription Cortex derived primary cultured neurospheres brain
2 chr1:95429000-95467600 Weak transcription Stomach Smooth Muscle stomach
3 chr1:95429200-95440200 Weak transcription Fetal Intestine Small intestine
4 chr1:95436200-95441200 Enhancers HSMM muscle
5 chr1:95436600-95445200 Weak transcription Placenta Amnion Placenta Amnion
6 chr1:95436600-95451200 Weak transcription Small Intestine intestine
7 chr1:95436800-95448600 Weak transcription Brain Angular Gyrus brain
8 chr1:95437000-95440200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
9 chr1:95437000-95441200 Enhancers HSMMtube muscle
10 chr1:95437400-95442000 Weak transcription Fetal Heart heart
11 chr1:95437600-95440200 Enhancers Muscle Satellite Cultured Cells --
12 chr1:95437600-95441000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
13 chr1:95437600-95455600 Weak transcription ES-I3 Cell Line embryonic stem cell
14 chr1:95437800-95445400 Weak transcription Right Atrium heart
15 chr1:95437800-95455000 Weak transcription Sigmoid Colon Sigmoid Colon
16 chr1:95437800-95458400 Weak transcription Liver Liver
17 chr1:95438000-95440200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
18 chr1:95438000-95440400 Weak transcription Placenta Placenta
19 chr1:95438000-95440600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
20 chr1:95438000-95445400 Weak transcription Duodenum Smooth Muscle Duodenum
21 chr1:95438000-95445400 Weak transcription Left Ventricle heart
22 chr1:95438200-95440200 Weak transcription Fetal Adrenal Gland Adrenal Gland
23 chr1:95438200-95445800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
24 chr1:95438600-95440800 Enhancers Fetal Muscle Leg muscle
25 chr1:95438600-95441000 Enhancers NHLF lung
26 chr1:95438800-95440400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr1:95438800-95440800 Enhancers Adipose Nuclei Adipose
28 chr1:95439000-95440200 Enhancers Colon Smooth Muscle Colon
29 chr1:95439200-95440400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
30 chr1:95439200-95440800 Enhancers Breast Myoepithelial Primary Cells Breast
31 chr1:95439200-95440800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
32 chr1:95439400-95440400 Weak transcription Skeletal Muscle Female skeletal muscle
33 chr1:95439400-95445800 Weak transcription Fetal Stomach stomach
34 chr1:95439400-95446000 Weak transcription Primary T cells from cord blood blood
35 chr1:95439600-95448600 Weak transcription Right Ventricle heart
36 chr1:95439800-95440400 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
37 chr1:95439800-95440800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
38 chr1:95439800-95440800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr1:95439800-95441000 Enhancers HMEC breast
40 chr1:95439800-95441000 Enhancers NH-A brain
41 chr1:95439800-95441200 Enhancers NHEK skin
42 chr1:95440000-95440200 Enhancers Brain Inferior Temporal Lobe brain
43 chr1:95440000-95440400 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr1:95440000-95440400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
45 chr1:95440000-95440400 Enhancers Fetal Kidney kidney
46 chr1:95440000-95440400 Flanking Active TSS Osteobl bone
47 chr1:95440000-95440800 Flanking Active TSS NHDF-Ad bronchial

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Last update: Aug 31, 2015