Variant report
| Variant | rs12063582 |
|---|---|
| Chromosome Location | chr1:216475847-216475848 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10158515 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10159360 | 1.00[YRI][hapmap] |
| rs10495020 | 1.00[EUR][1000 genomes] |
| rs11120749 | 1.00[YRI][hapmap] |
| rs11120761 | 1.00[EUR][1000 genomes] |
| rs12057526 | 1.00[EUR][1000 genomes] |
| rs12067103 | 1.00[EUR][1000 genomes] |
| rs12073672 | 1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12078537 | 1.00[YRI][hapmap] |
| rs12084263 | 1.00[YRI][hapmap] |
| rs12085974 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12091266 | 1.00[EUR][1000 genomes] |
| rs12091601 | 1.00[EUR][1000 genomes] |
| rs12092128 | 1.00[YRI][hapmap] |
| rs12092433 | 1.00[YRI][hapmap] |
| rs12239229 | 0.91[YRI][hapmap] |
| rs13376107 | 1.00[YRI][hapmap] |
| rs13376571 | 1.00[YRI][hapmap] |
| rs4350256 | 0.80[YRI][hapmap] |
| rs58809093 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59175279 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61209724 | 1.00[EUR][1000 genomes] |
| rs6659372 | 1.00[YRI][hapmap] |
| rs6668781 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6679594 | 1.00[EUR][1000 genomes] |
| rs73096657 | 1.00[EUR][1000 genomes] |
| rs73098604 | 1.00[EUR][1000 genomes] |
| rs74141506 | 1.00[EUR][1000 genomes] |
| rs74141508 | 1.00[EUR][1000 genomes] |
| rs876075 | 1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1006504 | chr1:215890460-216642124 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv535288 | chr1:215890460-216642124 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv549199 | chr1:216384908-216814702 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv998835 | chr1:216439672-216482235 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
