Variant report

Variant rs12066478
Chromosome Location chr1:113392462-113392463
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:113 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:113388600-113394600 Weak transcription Hela-S3 cervix
2 chr1:113391800-113392600 Active TSS Brain Germinal Matrix brain
3 chr1:113391800-113392800 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
4 chr1:113391800-113392800 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
5 chr1:113391800-113393000 Active TSS HUES48 Cell Line embryonic stem cell
6 chr1:113391800-113393000 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
7 chr1:113391800-113393000 Active TSS A549 lung
8 chr1:113391800-113393600 Flanking Active TSS HUVEC blood vessel
9 chr1:113391800-113393800 Enhancers Fetal Brain Male brain
10 chr1:113391800-113394200 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr1:113391800-113394800 Active TSS ES-I3 Cell Line embryonic stem cell
12 chr1:113392000-113392600 Flanking Bivalent TSS/Enh H1 Cell Line embryonic stem cell
13 chr1:113392000-113392600 Flanking Bivalent TSS/Enh H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr1:113392000-113392600 Flanking Active TSS iPS DF 6.9 Cell Line embryonic stem cell
15 chr1:113392000-113392600 Enhancers Primary T helper naive cells from peripheral blood blood
16 chr1:113392000-113392600 Flanking Bivalent TSS/Enh Foreskin Melanocyte Primary Cells skin01 Skin
17 chr1:113392000-113392600 Flanking Bivalent TSS/Enh Colonic Mucosa Colon
18 chr1:113392000-113392600 Flanking Active TSS NHEK skin
19 chr1:113392000-113392800 Active TSS H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr1:113392000-113392800 Flanking Active TSS HUES6 Cell Line embryonic stem cell
21 chr1:113392000-113392800 Bivalent Enhancer Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr1:113392000-113392800 Flanking Bivalent TSS/Enh Primary B cells from peripheral blood blood
23 chr1:113392000-113392800 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells short term culture blood
24 chr1:113392000-113392800 Bivalent Enhancer Primary T regulatory cells fromperipheralblood blood
25 chr1:113392000-113392800 Flanking Bivalent TSS/Enh Primary T cells effector/memory enriched fromperipheralblood blood
26 chr1:113392000-113392800 Bivalent Enhancer Primary Natural Killer cells fromperipheralblood blood
27 chr1:113392000-113392800 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr1:113392000-113392800 Flanking Active TSS Muscle Satellite Cultured Cells --
29 chr1:113392000-113392800 Flanking Bivalent TSS/Enh Foreskin Melanocyte Primary Cells skin03 Skin
30 chr1:113392000-113392800 Flanking Active TSS Liver Liver
31 chr1:113392000-113392800 Flanking Bivalent TSS/Enh Duodenum Smooth Muscle Duodenum
32 chr1:113392000-113392800 Active TSS Fetal Kidney kidney
33 chr1:113392000-113392800 Bivalent Enhancer Lung lung
34 chr1:113392000-113392800 Flanking Bivalent TSS/Enh Rectal Mucosa Donor 31 rectum
35 chr1:113392000-113392800 Flanking Bivalent TSS/Enh Skeletal Muscle Male skeletal muscle
36 chr1:113392000-113392800 Flanking Bivalent TSS/Enh Stomach Smooth Muscle stomach
37 chr1:113392000-113392800 Bivalent/Poised TSS Thymus Thymus
38 chr1:113392000-113392800 Bivalent/Poised TSS HepG2 liver
39 chr1:113392000-113393000 Flanking Active TSS H1 Derived Mesenchymal Stem Cells ES cell derived
40 chr1:113392000-113393000 Bivalent/Poised TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
41 chr1:113392000-113393000 Flanking Bivalent TSS/Enh IMR90 fetal lung fibroblasts Cell Line lung
42 chr1:113392000-113393000 Flanking Active TSS iPS DF 19.11 Cell Line embryonic stem cell
43 chr1:113392000-113393000 Bivalent/Poised TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
44 chr1:113392000-113393000 Flanking Bivalent TSS/Enh Breast Myoepithelial Primary Cells Breast
45 chr1:113392000-113393000 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells blood
46 chr1:113392000-113393000 Bivalent Enhancer Primary T helper cells PMA-I stimulated --
47 chr1:113392000-113393000 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells G-CSF-mobilized Male --
48 chr1:113392000-113393000 Flanking Bivalent TSS/Enh Adipose Nuclei Adipose
49 chr1:113392000-113393000 Active TSS Brain Angular Gyrus brain
50 chr1:113392000-113393000 Bivalent/Poised TSS Colon Smooth Muscle Colon

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