The 2.0 version of rSNPBase

Variant report

Variant rs7520778
Chromosome Location chr1:113394671-113394672
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:113391800-113394800 Active TSS ES-I3 Cell Line embryonic stem cell
2 chr1:113392400-113394800 Active TSS Duodenum Mucosa Duodenum
3 chr1:113392400-113397800 Weak transcription iPS-18 Cell Line embryonic stem cell
4 chr1:113392600-113394800 Weak transcription H9 Cell Line embryonic stem cell
5 chr1:113392800-113395000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr1:113392800-113397200 Weak transcription Pancreas Pancrea
7 chr1:113393000-113394800 Weak transcription HUES6 Cell Line embryonic stem cell
8 chr1:113393000-113395200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr1:113393000-113397200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
10 chr1:113393000-113397200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
11 chr1:113393000-113397600 Weak transcription A549 lung
12 chr1:113393000-113397800 Weak transcription HUES64 Cell Line embryonic stem cell
13 chr1:113393200-113394800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr1:113393200-113397200 Weak transcription Cortex derived primary cultured neurospheres brain
15 chr1:113393400-113395600 Weak transcription Placenta Amnion Placenta Amnion
16 chr1:113393400-113397600 Weak transcription NH-A brain
17 chr1:113393600-113394800 Weak transcription iPS-15b Cell Line embryonic stem cell
18 chr1:113393600-113395000 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
19 chr1:113393600-113396000 Weak transcription Fetal Brain Female brain
20 chr1:113393600-113397000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
21 chr1:113393600-113397200 Weak transcription Osteobl bone
22 chr1:113393800-113394800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
23 chr1:113393800-113394800 Weak transcription Fetal Brain Male brain
24 chr1:113393800-113394800 Enhancers NHEK skin
25 chr1:113393800-113395200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
26 chr1:113393800-113397800 Weak transcription H1 Cell Line embryonic stem cell
27 chr1:113393800-113398000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
28 chr1:113394200-113395000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
29 chr1:113394200-113395200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr1:113394400-113394800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr1:113394400-113395400 Enhancers HUVEC blood vessel
32 chr1:113394600-113394800 Enhancers K562 blood
33 chr1:113394600-113394800 Bivalent Enhancer Monocytes-CD14+_RO01746 blood
34 chr1:113394600-113395000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
35 chr1:113394600-113395000 Flanking Active TSS Muscle Satellite Cultured Cells --
36 chr1:113394600-113395000 Active TSS Brain Cingulate Gyrus brain
37 chr1:113394600-113395000 Enhancers Hela-S3 cervix
38 chr1:113394600-113395200 Flanking Active TSS Placenta Placenta
39 chr1:113394600-113395600 Enhancers HMEC breast
40 chr1:113394600-113397000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015