Variant report

Variant	rs12069214
Chromosome Location	chr1:226762648-226762649
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:226762291..226765130-chr1:226766414..226768720,3	K562	blood:
2	chr1:226755240..226758570-chr1:226759106..226763916,5	K562	blood:

rs_ID	r²[population]
rs12065556	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12077517	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2889481	0.88[EUR][1000 genomes]
rs60773187	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6691873	0.86[EUR][1000 genomes]

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226750000-226763200	Weak transcription	Fetal Intestine Small	intestine
2	chr1:226755600-226762800	Weak transcription	Brain Germinal Matrix	brain
3	chr1:226756600-226762800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr1:226756600-226764400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:226756600-226764600	Weak transcription	Brain Substantia Nigra	brain
6	chr1:226756600-226764800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr1:226757200-226763000	Weak transcription	Fetal Brain Female	brain
8	chr1:226757400-226764800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr1:226757800-226764800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:226758400-226763000	Weak transcription	Brain Anterior Caudate	brain
11	chr1:226758400-226764200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr1:226758400-226765200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr1:226758600-226762800	Weak transcription	Fetal Brain Male	brain
14	chr1:226760800-226763000	Weak transcription	Pancreas	Pancrea
15	chr1:226762000-226764800	Enhancers	Brain Hippocampus Middle	brain
16	chr1:226762000-226764800	Enhancers	Rectal Smooth Muscle	rectum
17	chr1:226762200-226762800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:226762200-226765600	Enhancers	Colon Smooth Muscle	Colon
19	chr1:226762400-226763400	Enhancers	Right Ventricle	heart
20	chr1:226762400-226763800	Enhancers	Placenta	Placenta
21	chr1:226762400-226764000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
22	chr1:226762400-226764800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:226762400-226765000	Enhancers	Fetal Muscle Leg	muscle
24	chr1:226762600-226762800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr1:226762600-226763000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr1:226762600-226763000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
27	chr1:226762600-226763400	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr1:226762600-226764400	Enhancers	Stomach Smooth Muscle	stomach
29	chr1:226762600-226765000	Enhancers	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links