Variant report

Variant	rs2889481
Chromosome Location	chr1:226762368-226762369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:226750487..226752491-chr1:226760804..226762523,2	MCF-7	breast:
2	chr1:226762291..226765130-chr1:226766414..226768720,3	K562	blood:
3	chr1:226755240..226758570-chr1:226759106..226763916,5	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12029429	0.81[CHB][hapmap];0.92[JPT][hapmap]
rs12065556	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12069214	0.88[EUR][1000 genomes]
rs12077517	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2126331	1.00[CEU][hapmap]
rs603609	1.00[CEU][hapmap]
rs665165	1.00[CEU][hapmap]
rs6691873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs708748	1.00[CEU][hapmap]
rs708749	1.00[CEU][hapmap]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226750000-226763200	Weak transcription	Fetal Intestine Small	intestine
2	chr1:226755600-226762800	Weak transcription	Brain Germinal Matrix	brain
3	chr1:226756200-226762600	Weak transcription	Right Atrium	heart
4	chr1:226756600-226762400	Weak transcription	Right Ventricle	heart
5	chr1:226756600-226762800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr1:226756600-226764400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:226756600-226764600	Weak transcription	Brain Substantia Nigra	brain
8	chr1:226756600-226764800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr1:226757200-226763000	Weak transcription	Fetal Brain Female	brain
10	chr1:226757400-226764800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr1:226757800-226764800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:226758400-226762600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr1:226758400-226763000	Weak transcription	Brain Anterior Caudate	brain
14	chr1:226758400-226764200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr1:226758400-226765200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr1:226758600-226762800	Weak transcription	Fetal Brain Male	brain
17	chr1:226760600-226762600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr1:226760800-226763000	Weak transcription	Pancreas	Pancrea
19	chr1:226762000-226762400	Enhancers	Liver	Liver
20	chr1:226762000-226764800	Enhancers	Brain Hippocampus Middle	brain
21	chr1:226762000-226764800	Enhancers	Rectal Smooth Muscle	rectum
22	chr1:226762200-226762400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:226762200-226762400	Enhancers	Fetal Muscle Trunk	muscle
24	chr1:226762200-226762800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr1:226762200-226765600	Enhancers	Colon Smooth Muscle	Colon

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