Variant report

Variant	rs12077517
Chromosome Location	chr1:226766045-226766046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12065556	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12069214	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2889481	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60773187	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6691873	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226763000-226777200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:226763400-226767000	Weak transcription	Ovary	ovary
3	chr1:226765000-226790000	Weak transcription	Right Atrium	heart
4	chr1:226765400-226766600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr1:226765400-226769200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr1:226765600-226768400	Weak transcription	Brain Anterior Caudate	brain
7	chr1:226765600-226768600	Weak transcription	Colon Smooth Muscle	Colon
8	chr1:226765600-226771200	Weak transcription	Fetal Muscle Leg	muscle
9	chr1:226765600-226775400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr1:226765600-226776800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr1:226765600-226777400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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