Variant report

Variant	rs6691873
Chromosome Location	chr1:226764886-226764887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:226762291..226765130-chr1:226766414..226768720,3	K562	blood:
2	chr1:226763403..226765130-chr1:226766414..226768252,2	K562	blood:
3	chr1:226670505..226672311-chr1:226763715..226765421,2	K562	blood:
4	chr1:226764453..226766070-chr1:226766263..226768045,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12029429	0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12065556	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12069214	0.86[EUR][1000 genomes]
rs12077517	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2126331	1.00[CEU][hapmap]
rs2889481	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs603609	1.00[CEU][hapmap]
rs665165	1.00[CEU][hapmap]
rs708748	1.00[CEU][hapmap]
rs708749	1.00[CEU][hapmap]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226758400-226765200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:226762200-226765600	Enhancers	Colon Smooth Muscle	Colon
3	chr1:226762400-226765000	Enhancers	Fetal Muscle Leg	muscle
4	chr1:226762600-226765000	Enhancers	Right Atrium	heart
5	chr1:226763000-226765600	Enhancers	Brain Anterior Caudate	brain
6	chr1:226763000-226777200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:226763200-226765000	Weak transcription	Fetal Brain Male	brain
8	chr1:226763400-226765200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:226763400-226767000	Weak transcription	Ovary	ovary
10	chr1:226763600-226765200	Weak transcription	Fetal Brain Female	brain
11	chr1:226763600-226765400	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr1:226764000-226765200	Weak transcription	Brain Germinal Matrix	brain
13	chr1:226764000-226765200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr1:226764400-226765000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr1:226764400-226765400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr1:226764400-226765600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr1:226764600-226765400	Enhancers	Brain Angular Gyrus	brain
18	chr1:226764600-226765400	Enhancers	Brain Substantia Nigra	brain
19	chr1:226764800-226765000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:226764800-226765000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr1:226764800-226765400	Enhancers	Brain Cingulate Gyrus	brain
22	chr1:226764800-226765600	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr1:226764800-226765600	Enhancers	Stomach Smooth Muscle	stomach
24	chr1:226764800-226765800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr1:226764800-226765800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr1:226764800-226765800	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr1:226764800-226766000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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