Variant report

Variant	rs665165
Chromosome Location	chr1:226741757-226741758
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2126331	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2889481	1.00[CEU][hapmap]
rs4653766	1.00[TSI][hapmap]
rs55646582	1.00[EUR][1000 genomes]
rs603609	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap]
rs61527478	1.00[EUR][1000 genomes]
rs6691873	1.00[CEU][hapmap]
rs708748	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs708749	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs74139703	1.00[EUR][1000 genomes]
rs74139705	1.00[EUR][1000 genomes]
rs74141937	1.00[EUR][1000 genomes]
rs74141941	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832781	chr1:226570901-226750697	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226737600-226743000	Weak transcription	Aorta	Aorta
2	chr1:226738200-226741800	Enhancers	Brain Germinal Matrix	brain
3	chr1:226738600-226748200	Weak transcription	Spleen	Spleen
4	chr1:226739200-226752800	Weak transcription	Brain Anterior Caudate	brain
5	chr1:226739600-226741800	Weak transcription	Fetal Brain Male	brain
6	chr1:226739600-226744000	Weak transcription	Right Atrium	heart
7	chr1:226740000-226753400	Weak transcription	Fetal Brain Female	brain
8	chr1:226740600-226742400	Weak transcription	Brain Hippocampus Middle	brain
9	chr1:226740800-226742000	Enhancers	Fetal Lung	lung
10	chr1:226741400-226746200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr1:226741600-226742000	Bivalent Enhancer	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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