Variant report

Variant	rs55646582
Chromosome Location	chr1:226762828-226762829
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:226762291..226765130-chr1:226766414..226768720,3	K562	blood:
2	chr1:226755240..226758570-chr1:226759106..226763916,5	K562	blood:

rs_ID	r²[population]
rs2126331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61527478	1.00[EUR][1000 genomes]
rs665165	1.00[EUR][1000 genomes]
rs708748	1.00[EUR][1000 genomes]
rs708749	1.00[EUR][1000 genomes]
rs74139703	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74139705	1.00[EUR][1000 genomes]
rs74141937	1.00[EUR][1000 genomes]
rs74141940	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs74141941	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226750000-226763200	Weak transcription	Fetal Intestine Small	intestine
2	chr1:226756600-226764400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:226756600-226764600	Weak transcription	Brain Substantia Nigra	brain
4	chr1:226756600-226764800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:226757200-226763000	Weak transcription	Fetal Brain Female	brain
6	chr1:226757400-226764800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr1:226757800-226764800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:226758400-226763000	Weak transcription	Brain Anterior Caudate	brain
9	chr1:226758400-226764200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr1:226758400-226765200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:226760800-226763000	Weak transcription	Pancreas	Pancrea
12	chr1:226762000-226764800	Enhancers	Brain Hippocampus Middle	brain
13	chr1:226762000-226764800	Enhancers	Rectal Smooth Muscle	rectum
14	chr1:226762200-226765600	Enhancers	Colon Smooth Muscle	Colon
15	chr1:226762400-226763400	Enhancers	Right Ventricle	heart
16	chr1:226762400-226763800	Enhancers	Placenta	Placenta
17	chr1:226762400-226764000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr1:226762400-226764800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:226762400-226765000	Enhancers	Fetal Muscle Leg	muscle
20	chr1:226762600-226763000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr1:226762600-226763000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
22	chr1:226762600-226763400	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr1:226762600-226764400	Enhancers	Stomach Smooth Muscle	stomach
24	chr1:226762600-226765000	Enhancers	Right Atrium	heart
25	chr1:226762800-226763000	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr1:226762800-226763200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr1:226762800-226763200	Enhancers	Fetal Brain Male	brain
28	chr1:226762800-226763600	Enhancers	Adipose Nuclei	Adipose
29	chr1:226762800-226763800	Enhancers	Fetal Stomach	stomach
30	chr1:226762800-226764000	Enhancers	Primary hematopoietic stem cells	blood
31	chr1:226762800-226764000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr1:226762800-226764000	Enhancers	Brain Germinal Matrix	brain

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