Variant report

Variant	rs12075620
Chromosome Location	chr1:150163947-150163948
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000184270	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000178096	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11205344	0.89[AMR][1000 genomes]
rs12060797	0.89[AMR][1000 genomes]
rs12063159	0.89[AMR][1000 genomes]
rs12086155	0.89[AFR][1000 genomes]
rs13375906	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16835254	0.89[AFR][1000 genomes]
rs3121003	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58395667	0.89[AFR][1000 genomes]
rs73009573	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73009583	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73009584	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv535153	chr1:150147218-150168829	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150159600-150164200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:150159600-150164400	Weak transcription	NHLF	lung
3	chr1:150160000-150164000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:150160200-150164200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr1:150160200-150164200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr1:150160200-150164200	Weak transcription	NHDF-Ad	bronchial
7	chr1:150160200-150164400	Weak transcription	Hela-S3	cervix
8	chr1:150160200-150166600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:150160400-150164200	Weak transcription	Osteobl	bone
10	chr1:150160400-150164400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:150160400-150164600	Weak transcription	A549	lung
12	chr1:150160600-150164200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:150160600-150164200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:150163600-150164200	Weak transcription	HSMMtube	muscle
15	chr1:150163800-150164200	Enhancers	Fetal Heart	heart
16	chr1:150163800-150164200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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