Variant report

Variant	rs73009584
Chromosome Location	chr1:150185865-150185866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150182720..150184289-chr1:150184985..150187517,2	MCF-7	breast:
2	chr1:149956254..149958159-chr1:150184298..150186686,2	MCF-7	breast:
3	chr1:150184759..150186606-chr1:150253891..150255792,2	MCF-7	breast:
4	chr1:149854142..149859760-chr1:150182757..150186625,7	MCF-7	breast:
5	chr1:150185544..150187613-chr1:150191565..150193238,2	MCF-7	breast:
6	chr1:150184319..150187106-chr1:150241598..150243125,2	MCF-7	breast:
7	chr1:150184020..150189547-chr1:150205905..150210191,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184270	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000117362	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000159208	Chromatin interaction
ENSG00000266187	Chromatin interaction
ENSG00000143401	Chromatin interaction
ENSG00000222222	Chromatin interaction
ENSG00000178096	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11205344	0.89[AMR][1000 genomes]
rs12060797	0.89[AMR][1000 genomes]
rs12063159	0.89[AMR][1000 genomes]
rs12075620	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12086155	0.96[AFR][1000 genomes]
rs13375906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16835254	0.96[AFR][1000 genomes]
rs3121003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58395667	0.96[AFR][1000 genomes]
rs73009573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73009583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150184200-150195800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:150184200-150206600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:150185400-150186000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:150185400-150186000	Enhancers	Primary B cells from peripheral blood	blood
5	chr1:150185400-150186000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:150185400-150186000	Flanking Active TSS	Adipose Nuclei	Adipose
7	chr1:150185400-150186000	Flanking Active TSS	Liver	Liver
8	chr1:150185400-150186000	Enhancers	Left Ventricle	heart
9	chr1:150185400-150186200	Enhancers	Stomach Mucosa	stomach
10	chr1:150185400-150186200	Enhancers	Spleen	Spleen
11	chr1:150185400-150186600	Active TSS	Brain Anterior Caudate	brain
12	chr1:150185400-150186800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
13	chr1:150185400-150186800	Flanking Active TSS	Dnd41	blood
14	chr1:150185600-150186000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:150185600-150186000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:150185600-150186000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
17	chr1:150185600-150186000	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr1:150185600-150186000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
19	chr1:150185600-150186000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr1:150185600-150186000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
21	chr1:150185600-150186000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
22	chr1:150185600-150186000	Flanking Active TSS	Fetal Brain Male	brain
23	chr1:150185600-150186000	Enhancers	Placenta	Placenta
24	chr1:150185600-150186200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr1:150185600-150186200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
26	chr1:150185600-150186200	Active TSS	Cortex derived primary cultured neurospheres	brain
27	chr1:150185600-150186200	Flanking Active TSS	HepG2	liver
28	chr1:150185600-150186200	Flanking Active TSS	NHEK	skin
29	chr1:150185600-150186400	Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr1:150185600-150186400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr1:150185600-150186400	Active TSS	iPS-20b Cell Line	embryonic stem cell
32	chr1:150185600-150186400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr1:150185600-150186400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr1:150185600-150186400	Active TSS	Primary T cells from cord blood	blood
35	chr1:150185600-150186400	Active TSS	Brain Angular Gyrus	brain
36	chr1:150185600-150186400	Active TSS	Colonic Mucosa	Colon
37	chr1:150185600-150186400	Active TSS	Fetal Brain Female	brain
38	chr1:150185600-150186400	Active TSS	Rectal Mucosa Donor 31	rectum
39	chr1:150185600-150186400	Active TSS	Thymus	Thymus
40	chr1:150185600-150186400	Active TSS	NHLF	lung
41	chr1:150185600-150186600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr1:150185600-150186600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
43	chr1:150185600-150186600	Active TSS	Psoas Muscle	Psoas
44	chr1:150185600-150186600	Active TSS	Rectal Mucosa Donor 29	rectum
45	chr1:150185600-150186600	Active TSS	Right Atrium	heart
46	chr1:150185600-150186800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr1:150185600-150186800	Active TSS	HUES6 Cell Line	embryonic stem cell
48	chr1:150185600-150186800	Active TSS	HUES64 Cell Line	embryonic stem cell
49	chr1:150185600-150186800	Active TSS	iPS-15b Cell Line	embryonic stem cell
50	chr1:150185600-150186800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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