Variant report
| Variant | rs73009573 |
|---|---|
| Chromosome Location | chr1:150178547-150178548 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000266187 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs11205344 | 0.89[AMR][1000 genomes] |
| rs12060797 | 0.89[AMR][1000 genomes] |
| rs12063159 | 0.89[AMR][1000 genomes] |
| rs12075620 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12086155 | 0.96[AFR][1000 genomes] |
| rs13375906 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16835254 | 0.96[AFR][1000 genomes] |
| rs3121003 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58395667 | 0.96[AFR][1000 genomes] |
| rs73009583 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73009584 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529719 | chr1:150006344-150311095 | Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 100 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
